species:   Bodot
pid:       PID1118
parent:    Bd-milR62
paralog:   
locus:     SACU01000010.1:1747509-1747599
matures:   ['CAUUUCCGUUUGGCUCGCUU', 'GUGAGAUCAUCGGCAGAGCG']
srr:       SRR8374850
genome:    /Users/jax/+Genomes/Fungal_genomes/Bodot.GCA_011064635.1_ASM1106463v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374850.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374850.cram SACU01000010.1:1747509-1747599

1 out of bounds
7 alignments
6 proper strand
6 stranded perfect matches

           **********************                          **********************          
GGUGCGGUAGGACGUGAGAUCAUCGGCAGAGCGUCACACAUACAUACAUACAGUUAGCAGGCAUUUCCGUUUGGCUCGCUUUCAUUGCAUG
.(((((((.(((.(((((.(((.(((.(((((.((..((.............))..).).)).))))))..)))))))).)))))))))).
-------------------------------------------------------------CAUUUCCGUUUGGCUCGCUU---------- l=20 a=5 c
-------------GUGAGAUCAUCGGCAGAGCG---------------------------------------------------------- l=20 a=0 c*
-------------------------------------------------------------CAUUUCCGUUUGGCUCGCUU---------- l=20 a=5 ma
-------------GUGAGAUCAUCGGCAGAGCG---------------------------------------------------------- l=20 a=0 ma*

--UGCGGUAGGACGUGAGAUCAUCGGC---------------------------------------------------------------- l=25 a=1 
-------------------------------------------------------------CAUUUCCGUUUGGCUCGCUU---------- l=20 a=5 (c,ma)

mb-01111
ax-1011011
ku-01
ss-111111111110
fn-111
